PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.353050.1
Common NameCsa_4G645240, LOC101203971
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 406aa    MW: 43653.8 Da    PI: 5.482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.353050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10241289355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Cucsa.353050.1 241 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289
                     58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-16236303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-11236293No hitNo description
PROSITE profilePS5088815.485238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16239305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7241289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGDLENDEMG FRNSNDGLMN CPSTMAMGSF FGSGWDPLVS LGQSENYGAA SSMVSSHGEF  60
SNSFPVVLEN HGGSGTTQQG VQYPTDLEMG SKLPCFGSGN FSEMFGSFGV AGQILGGCSS  120
NYRNGGTTNT TQTSQENLPL AGEEILPLSV GSPNGKIRKR GLDSTFPFSS NKKSDMKLKK  180
DVSGDSSSTQ EEKNAEMEQN LGGNSRGKST GKQTKEKSSN SAEAPKENYI HVRARRGQAT  240
NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA  300
TVNPDVNVDI ERILSKDIFN IRGSSGNVLG FDPGLSAVSP VPPHRMFQFQ GTMSSMPTTS  360
TQFPPMPQTM LESDLQSLLQ MGFDSGSTID NLGPNGILQT TVFAK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141299.20.0PREDICTED: transcription factor bHLH74-like
TrEMBLA0A0A0L0K50.0A0A0A0L0K5_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s11540.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-79bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]